dbigcg indexes a GCG-format database of one or more files and builds EMBL CD-ROM format index files. Here is a sample session with dbigcg: % dbigcg EMBL : EMBL SWISS : Swiss-Prot, SpTrEMBL, TrEMBLnew GB : Genbank, DDBJ PIR : NBRF Entry format [EMBL]: Database name: tembl Database directory [.]: /nfs/disk42/pmr/emboss/test/gcgembl/ Wildcard database filename [*.seq]: Release number [0.0]: Index date [00/00/00]: 04/02/00 Mandatory qualifiers: - -idformat (menu)
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Entry format. - -directory (string)
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Database directory. - -filenames (string)
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Wildcard database filename. - [-dbname] (string)
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Database name. - -release (string)
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Release number. - -date (string)
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Index date. Advanced qualifiers: - -fields (menu)
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Index fields. - -exclude (string)
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Wildcard filename(s) to exclude. - -indexdirectory (string)
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Index directory. - -maxindex (integer)
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Maximum index length. - sortoptions (string)
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Sort options, typically -T . to use current directory for work files, or -k 1,1 to force GNU sort to use the first field. - -[no]systemsort (boolean)
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Use system sort utility. - -[no]cleanup (boolean)
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Clean up temporary files. |