Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases

newcpgseek reports CpG rich regions of a sequence as candidate CpG islands.

Here is a sample session with newcpgseek:

% newcpgseek Input sequence: embl:rnu68037 CpG score [17]: Output file [rnu68037.newcpgseek]:

Mandatory qualifiers:

[-sequence] (seqall)

Sequence database USA.

-score (integer)

CpG score.

[-outfile] (outfile)

Output filename.