Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases

Options

-a

Convert to HMMER 2 ASCII file.

-b

Convert to HMMER 2 binary file.

-h

Print brief help.

-p

Convert to GCG profile .prf format.

-A

Append mode; append to newhmmfile rather than creating a new file.

-F

Force

-P

Convert the HMM to Compugen XSW extended profile format.