Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases

  • Durbin, Richard, Sean Eddy, Anders Krogh, and Graeme Mitchison. 1998. Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids. Cambridge: Cambridge University Press.

  • Eddy, S.R. 1998. Profile hidden Markov models. Bioinformatics 14:755-763.

    Main page

    http://hmmer.wustl.edu/

    README

    ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/CURRENT/00README

    Download

    ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.2g/hmmer-2.2g.tar.gz
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