cirdna draws circular maps of DNA constructs. Here is a sample session with cirdna: % cirdna Draws circular maps of DNA constructs Graph type [x11]: Input file [inputfile]: data.cirp do you want a ruler (Y or N) [Y]: type of blocks (enter Open, Filled, or Outline) [Filled]: ticks inside or outside the circle (enter In or Out) [Out]: text inside or outside the blocks (enter In or Out) [In]: Mandatory qualifiers: - -graphout (graph)
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Graph type. - -inputfile (infile)
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Input file containing mapping data. - -ruler (string)
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Do you want a ruler (Y or N)? - -blocktype (string)
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Type of blocks: Open, Gilled, or Outline. Outline draws filled blocks surrounded by a black border. - -posticks (string)
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Ticks inside or outside the circle (enter In or Out). - -posblocks (string)
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Text inside or outside the blocks (enter In or out). Optional qualifiers: - -originangle (float)
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Position of the molecule's origin on the circle (enter a number in the range 0-360). - -intersymbol (string)
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Do you want horizontal junctions between blocks (Y or N)? - -intercolor (integer)
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Color of junctions between blocks (enter a color number). - -interticks (string)
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Do you want horizontal junctions between ticks (Y or N)? - -gapsize (integer)
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Interval between ticks in the ruler (enter an integer). - -ticklines (string)
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Do you want vertical lines at the ruler's ticks (Y or N)? - -textheight (float)
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Height of text; enter a number less than or greater than one to decrease or increase the size, respectively. - -textlength (float)
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Length of text; enter a number less than or greater than one to decrease or increase the size, respectively. - -tickheight (float)
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Height of ticks; enter a number less than or greater than one to decrease or increase the size, respectively. - -blockheight (float)
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Height of blocks; enter a number less than or greater than one to decrease or increase the size, respectively. - -rangeheight (float)
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Height of range ends; enter a number less than or greater than one to decrease or increase the size, respectively. - -gapgroup (float)
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Space between groups; enter a number less than or greater than one to decrease or increase the size, respectively. - -postext (float)
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Space between text and ticks, blocks, and ranges; enter a number less than or greater than one to decrease or increase the size, respectively. |