Mastering Perl for Bioinformatics

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candidate keys  

capturing in patterns  

caret (^)  

Carp module   2nd  

case-insensitive matching  

CERN  

CGI (Common Gateway Interface)   2nd  

       CGI.pm   2nd  

               functions  

               using  

       programs  

               checking syntax  

               error logs  

               installing  

               testing  

               writing  

       scripts  

       webrebase1 program  

chaining, logical operators  

character classes  

class data  

class inheritance   2nd  

Class::Struct  

classes   2nd  

       base class  

       documentation with POD  

       example of a Perl class  

       using  

client-server architecture  

clone constructor  

close (system call)  

closures   2nd  

CMYK  

codon2aa subroutine  

colon and forward slashes (://)  

color tables  

colorAllocate method  

command-line

       input files, naming on  

       interface to SQL  

commands

       interpretation line  

comments  

Common Gateway Interface   [See CGI]

complex (or imaginary) numbers  

complex data structures   2nd  

       dereferencing  

       hashes with array values  

       printing  

Comprehensive Perl Archive Network   [See CPAN]

computer graphics   [See graphics]

concatenating strings  

conditional statements  

       expressions in loops  

connect method  

constructor methods  

       FileIO.pm  

constructors

       clone  

       Gene.pm  

context  

control flow

       logical operators, using for  

copying

       arrays  

CPAN (Comprehensive Perl Archive Network)  

create database command  

create table command  

croak function  

croak subroutine  

curly braces ( {} )   2nd  

       dereferencing and  

current directory  

cut sites  

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