UNIX: The Complete Reference, Second Edition (Complete Reference Series)
These are two of the best references available for Java programmers. They are targeted at someone who is already somewhat comfortable with Java, or has a strong understanding of C++:
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Block, Joshua. Effective Java Programming Language Guide. 1st ed. Boston, MA: Addison Wesley, 2001.
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Haggar, Peter. Practical Java Programming Language Guide. 1st ed. Boston, MA: Addison Wesley, 2000.
A very accessible beginner’s guide to Java is
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Sierra, Kathy, and Bert Bates. Head First Java. 2nd ed. Sebastopol, CA: O’Reilly, 2005.
A good introduction to Swing and Java GUIs is
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Walrath, Kathy et al. The JFC Swing Tutorial: A Guide to Constructing GUIs. 2nd ed. Boston, MA: Addison Wesley, 2004.
If you plan to use J2EE for enterprise development, check out
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Johnson, Rod, and Juergen Hoeller. Expert One-on-One J2EE Development without EJB. 1st ed. Indianapolis, IN: Wrox-Wiley, 2004.
Sun has extensive Java documentation on the web, including tutorials and a complete API reference, at
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http://java.sun.com/docs/
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